sci-biology/GBrowse/GBrowse-2.48-r1.ebuild

   1 # Copyright 1999-2015 Gentoo Foundation
   2 # Distributed under the terms of the GNU General Public License v2
   3 # $Id$
   4
   5 EAPI=5
   6
   7 MODULE_AUTHOR=LDS
   8 inherit perl-module webapp
   9
  10 DESCRIPTION="Generic Model Organism Database Project - The Generic Genome Browser"
  11 HOMEPAGE="http://gmod.org/wiki/GBrowse"
  12 KEYWORDS="~amd64 ~x86"
  13 IUSE="-minimal mysql postgres +sqlite"
  14
  15 SLOT="0"
  16 WEBAPP_MANUAL_SLOT="yes"
  17
  18 CDEPEND="!<sci-biology/GBrowse-2.44-r1
  19         >=sci-biology/bioperl-1.6.9
  20         >=dev-perl/Bio-Graphics-2.09
  21         >=dev-perl/GD-2.07
  22         >=dev-perl/CGI-Session-4.02
  23         dev-perl/IO-String
  24         dev-perl/JSON
  25         dev-perl/libwww-perl
  26         dev-perl/Statistics-Descriptive
  27         !minimal? (
  28                 dev-perl/Bio-Das
  29                 >=dev-perl/Bio-SamTools-1.20
  30                 dev-perl/Crypt-SSLeay
  31                 dev-perl/DB_File-Lock
  32                 dev-perl/DBI
  33                 mysql? ( dev-perl/DBD-mysql )
  34                 postgres? ( dev-perl/DBD-Pg )
  35                 sqlite? ( dev-perl/DBD-SQLite )
  36                 dev-perl/FCGI
  37                 dev-perl/File-NFSLock
  38                 dev-perl/GD-SVG
  39                 dev-perl/Net-OpenID-Consumer
  40                 dev-perl/Net-SMTP-SSL
  41         )"
  42 #               >=dev-perl/Bio-DB-BigFile-1.00 - requires jklib to compile
  43 DEPEND="dev-perl/Module-Build
  44         dev-perl/Capture-Tiny
  45         ${CDEPEND}"
  46 RDEPEND="${CDEPEND}"
  47
  48 PATCHES=( "${FILESDIR}"/GBrowseInstall.pm-2.39.patch )
  49
  50 src_configure() {
  51         webapp_src_preinst
  52
  53 #       myconf="--install_base=${D}/usr" or "--install_base=/opt/gbrowse"
  54         myconf="--conf=/etc/gbrowse2"
  55         myconf="${myconf} --htdocs=${MY_HTDOCSDIR}"
  56         myconf="${myconf} --cgibin=${MY_CGIBINDIR}"
  57         myconf="${myconf} --tmp=/var/tmp/gbrowse2"
  58         myconf="${myconf} --persistent=/var/db/gbrowse2"
  59         myconf="${myconf} --databases=/var/db/gbrowse2/databases"
  60         myconf="${myconf} --installconf=no"
  61         myconf="${myconf} --installetc=no"
  62         perl-module_src_configure
  63 }
  64
  65 src_install() {
  66         dodir /var/tmp/gbrowse2
  67         dodir /var/db/gbrowse2/sessions
  68         dodir /var/db/gbrowse2/userdata
  69         webapp_serverowned -R /var/tmp/gbrowse2 /var/db/gbrowse2
  70         perl-module_src_install
  71         webapp_src_install
  72 }