posts/Hooke-update.mdwn

   1 Minor tweaks to Hooke's [command
   2 stacks](http://www.physics.drexel.edu/~wking/code/hg/hgwebdir.cgi/hooke/rev/8c0882dfbaf5).  I can now execute the GUI alternative of
   3
   4     ./bin/hk.py
   5         -c 'new_playlist'
   6         -c 'glob_curves_to_playlist *'
   7         -c 'start_command_capture'
   8         -c 'zero_surface_contact_point --block retract'
   9         -c 'stop_command_capture'
  10         -c 'apply_command_stack_to_playlist'
  11         -c 'curve_info'
  12         -p
  13
  14 Issues resolved today:
  15
  16 - GUI-generated commands clogging the command stack instead of
  17   being executed.  Fixed with CommandMessage.explicit_user_call.
  18 - Playlist._loaded desyncronization from old 'apply command stack
  19   to playlist'.  Fixed with Playlist.unload().
  20
  21 Update:
  22
  23 After [fixing up a few more
  24 bugs](http://www.physics.drexel.edu/~wking/code/hg/hgwebdir.cgi/hooke/rev/7ba2243a9b45),
  25 I successfully ran:
  26
  27     ./bin/hk.py
  28         -c 'new_playlist'
  29         -c 'glob_curves_to_playlist *'
  30         -c 'start_command_capture'
  31         -c 'zero_surface_contact_point --block retract'
  32         -c 'flat_filter_peaks --block retract --min_points 1'
  33         -c 'zero_surface_contact_point --block retract --ignore_after_last_peak_info_name "flat filter peaks"'
  34         -c 'convert_distance_to_force --block retract --deflection_column "surface deflection (m)"'
  35         -c 'remove_cantilever_from_extension --block retract'
  36         -c 'flat_peaks_to_polymer_peaks --block retract'
  37         -c 'polymer_fit_peaks --block retract'
  38         -c 'stop_command_capture'
  39         -c 'apply_command_stack_to_playlist --enable-evaluate'
  40         -c 'save_playlist --output o.hkp'
  41
  42 on 2400 curves with the command line UI.  Tomorrow I'll run through
  43 those with the GUI.
  44
  45 Update:
  46
  47 I ran through with the above command with the GUI.  Same results :D.
  48 It did, however turn up a couple of outstanding issues:
  49
  50 - lots of useless `!!python/unicode 'retract'` tags.  If the strings
  51   are all in ASCII, I don't really care if they are loaded as unicode
  52   or string objects.
  53   ([fixed](http://www.physics.drexel.edu/~wking/code/hg/hgwebdir.cgi/hooke/rev/302413fafa96))
  54 - `surface distance (m) (m)` column.  Obviously someone is adding
  55   units twice.  I need to figure out who it is ;).
  56   ([[Reproduced|Hooke-update-2]])
  57
  58 [[!tag tags/hooke]]
  59 [[!tag tags/programming]]