4 # full-sized image dimensions
15 $(DEST)/1TIT-atoms.mp4 \
16 $(DEST)/takamori-fig4b-fw-fh.png \
17 $(DEST)/skeletal-muscle-fw-fh.png \
18 $(DEST)/titin-fw-fh.png \
19 $(DEST)/1TIT-fw-fh.png \
20 $(DEST)/1TIT-tw-th.png \
21 $(DEST)/pirchi-fig1-fw-hh.png \
22 $(DEST)/afm-3d-fw-fh.png \
23 $(DEST)/contact-afm.ogv \
24 $(DEST)/afm-fw-fh.png \
25 $(DEST)/piezo-fw-fh.png \
26 $(DEST)/unfolding-fw-fh.png \
27 $(DEST)/unfolding-hw-fh.png \
28 $(DEST)/unfolding-hw-hh.png \
29 $(DEST)/expt-sawtooth-fw-fh.png \
30 $(DEST)/expt-sawtooth-hw-hh.png \
31 $(DEST)/carrion-vazquez-fig2-fw-fh.png \
32 $(DEST)/lu-fig1-fw-fh.png \
33 $(DEST)/apparatus-fw-fh.png \
34 $(DEST)/labview-fw-fh.png \
35 $(DEST)/pyafm-fw-fh.png \
36 $(DEST)/ants-fw-fh.png \
37 $(DEST)/cantilever.jpg \
39 $(DEST)/vibration-fw-fh.png \
40 $(DEST)/vibration-hw-fh.png \
41 $(DEST)/bump-fw-fh.png \
42 $(DEST)/florin-fig2-hw-fh.png \
43 $(DEST)/pbs-hist-hw-hh.png \
44 $(DEST)/sawsim-states-hw-fh.png \
45 $(DEST)/sawsim-states-hw-hh.png \
46 $(DEST)/monte-carlo-fw-fh.png \
47 $(DEST)/landscape-hw-hh.png \
48 $(DEST)/landscape-hw-fh.png \
49 $(DEST)/landscape-bell-hw-hh.png \
50 $(DEST)/kramers-integrand-hw-hh.png \
51 $(DEST)/wlc-model-hw-fh.png \
52 $(DEST)/fjc-model-hw-fh.png \
53 $(DEST)/fit-valley-fw-fh.png \
54 $(DEST)/1TIT-hbond-fw-fh.png
56 # $(DEST)/landscape-cant-hw-hh.png
58 .PRECIOUS: $(DEST)/% $(DEST)/%.png $(DEST)/%.pdf
60 all: index.html $(THUMBNAILS)
63 rm -f index.html $(DEST)/* $(SRC)/pymol/*-0*.png
66 itex2MML < "$(<)" > "$(@)"
68 ## Get the high-resolution source into PNG format
71 $(DEST)/%: $(SRC)/binary/%
74 # TODO: re-render and crop?
75 $(DEST)/%: $(SRC)/matplotlib/%
78 # TODO: re-render and crop?
79 $(DEST)/%: $(SRC)/tikz/%
82 # TODO: extract from the VI? (probably not ;)
83 $(DEST)/%: $(SRC)/labview/%
87 $(DEST)/%.png: $(SRC)/binary/%.jpg
91 $(DEST)/%.png: $(SRC)/binary/%.pdf
92 convert -density 350 "$(<)" "$(@)"
94 # compile Asymptote graphics
95 $(DEST)/%.pdf: $(SRC)/asy/%.asy
96 asy -noprc -render=0 -f pdf -cd "$(<D)" -o "$(*).pdf" "$(*).asy"
97 mv "$(<D)/$(*).pdf" "$(@)"
99 # convert Asympote PDFs
100 $(DEST)/%.png: $(DEST)/%.pdf
101 convert -density 350 "$(<)" "$(@)"
103 # convert PyMol images
104 $(DEST)/%.png: $(SRC)/pymol/%.pml
105 cd "$(SRC)/pymol" && pymol -cq "$(*).pml"
106 mv "$(SRC)/pymol/$(*).png" "$(@)"
108 # convert PyMol images
109 $(DEST)/%.mp4: $(SRC)/pymol/%.pml
110 cd "$(SRC)/pymol" && pymol -cq "$(*).pml"
111 ffmpeg -y -r 20 -i "$(SRC)/pymol/$(*)-%4d.png" -s 640x480 -vcodec libx264 \
112 -preset slower -vpre ipod640 -b:v 800k -bt 800k -aspect 640:480 \
115 ## Convert to the desired geometry
117 # full width, full height
118 $(DEST)/%-fw-fh.png: $(DEST)/%.png
119 convert -format png -strip -quality 95 "$(<)" -thumbnail $(WIDTH)x$(HEIGHT) "$(@)"
121 # half width, full height
122 $(DEST)/%-hw-fh.png: $(DEST)/%.png
123 convert -format png -strip -quality 95 "$(<)" -thumbnail $(HALF_WIDTH)x$(HEIGHT) "$(@)"
125 # full width, half height
126 $(DEST)/%-fw-hh.png: $(DEST)/%.png
127 convert -format png -strip -quality 95 "$(<)" -thumbnail $(WIDTH)x$(HALF_HEIGHT) "$(@)"
129 # half width, half height
130 $(DEST)/%-hw-hh.png: $(DEST)/%.png
131 convert -format png -strip -quality 95 "$(<)" -thumbnail $(HALF_WIDTH)x$(HALF_HEIGHT) "$(@)"
133 # third width, third height
134 $(DEST)/%-tw-th.png: $(DEST)/%.png
135 convert -format png -strip -quality 95 "$(<)" -thumbnail $(THIRD_WIDTH)x$(THIRD_HEIGHT) "$(@)"